On their way through the Battle Frontier, Ash and friends meet up with a Pokémon Ranger who's mission is to deliever the egg of Manaphy to a temple on the ocean's floor. However, a greedy pirate wants the power of Manaphy to himself.

The story of "The Mastermind of Mirage Pokémon" centers on a Pokémon scientist who has developed a new Mirage System to resurrect extinct Pokémon. Satoshi, Haruka, Masato, and Takeshi show up at the Mirage Mansion for a demonstration of this new machine, only to witness the kidnapping of the scientist! Then a mysterious stranger appears and claims that the machine can actually create Pokémon without weaknesses. It’s up to Satoshi and company to preserve the natural balance of the Pokémon world.

When Giratina is discovered to be able to create parallel dimensions, it's up to Ash and his friends to stop a mysterious stranger from using its powers for evil.

Ash, Pikachu, and their friends come to a desert city by the sea. Here they meet the Mythical Pokémon Hoopa, which has the ability to summon things—including people and Pokémon—through its magic rings. After a scary incident, they learn of a story about a brave hero who stopped the rampage of a terrifying Pokémon long ago. Now, the threat that has been bottled up for years is in danger of breaking loose again.

Deoxys, a Pokémon from outer space, terrorizes the high-tech city Ash Ketchum and his friends are visiting.

Princess Rangiku lost her entire family to Lord Karimata, who invaded her home seeking her father's life work, puppets with unique capabilities. As her duty, Rangiku sets out with three of her father's greatest puppet warriors to seek revenge. She can manipulate these to battle the strongest of warriors, however manipulating the puppets leaves her own self vulnerable to direct attacks, so she seeks a ninja warrior named Manajiri to aid and protect her in her quest.

When the creator of the world, Arceus, comes to pass judgement on humanity for the theft of the legendary Jewel of Life, Ash and his friends are sent back in time to possibly reverse the events that led to Arceus' vendetta.

A group of five Genesect have invaded the big city and pose a threat to the supply of electricity, which attracts the attention of the legendary Pokémon Mewtwo. Satoshi, Pikachu and his friends must come to the rescue when the powerful leader, a red Genesect, faces Mewtwo.

Determined to prove its superiority, a bio-engineered Pokémon called Mewtwo lures Ash, Pikachu and others into a Pokemon match like none before.

Ash and his friends must stop a greedy media mogul from using the shape-shifting Zoroark to capture the time-travelling Celebi.

The Team Rocket leader, Giovanni, has found Mewtwo in a remote area of the Johto region. As Giovanni tries to re-capture Mewtwo, Ash and his friends are kidnapped by Domino, a new Team Rocket member, while trying to rescue Pikachu from Jessie and James. The Clone Pokemon are also captured and are then used as bait for Mewtwo. The situation then becomes a battle between the wills of Mewtwo and Giovanni; and Mewtwo also tries to discover if it and the clones have a purpose in life, even though they are products of science.

Following the incident in the Southeast Asia Union in 2116, Shinya Kogami resumes his vagrant journey. In a small South Asian nation, Kogami rescues a bus of refugees under attack by armed guerrilla forces. Among the refugees is a young lady by the name of Tenzin, who begs Kogami to teach her how to retaliate against the enemy. Just what does the girl who wishes for revenge and the man who has exacted revenge see as they gaze upon the edge of a world from which there is no escape?

In order to escape a greedy Pokémon hunter, Celebi must use the last of its energy to travel through time to the present day. Celebi brings along Sammy, a boy who had been trying to protect it. Along with Ash, Pikachu, and the rest of the gang, Sammy and Celebi must encounter an enemy far more advanced than the hunter, with the fate of the forest hanging in the balance.

The Kingdom of the People of the Earth once ruled over the land, but now all that remains is the Sword of the Earth. in the city of Eindoak. Satoshi, Iris, and Dent arrive in Eindoak during a harvest festival's Pokémon Tournament and meet the legendary Pokémon Victini who wishes to share its powers of victory to someone. Elsewhere in the city, a descendant of the People of the Earth named Dred Grangil has arrived who seeks to revive the kingdom's power with the Sword of the Earth, bringing them back into power over the land, and Satoshi and his friends must stop him before he destroys the land along with Victini.

Ash and his two friends Iris and Cilan help a Keldeo battle against a powerful Dragon-type Pokémon named Kyurem its his test to become a Sacred Swordsman.

A blast from Ben's past returns to do double the damage on Team Tennyson and planet Earth itself, forcing Ben to go interstellar to save the day. Based on the 2016 reboot.

Ash, May, Brock, and Max come upon the festival of the Wishing Star of Seven Nights. During their enjoyment, the legendary Pokemon--Jirachi, descends from the heavens and befriends Max. Jirachi, with the power to grant any wish, is sought after by many people wanting to claim its power. One man seeks to use its legendary power to revive an ancient Pokemon known as Groudon, unaware of the dangers hidden within Jirachi's powers

Lorenzo, Blue and Antonio have a lot in common: they are sixteen, attending the same class in the same school in a small town in the northeast, each have a family that loves them. And all three, though for different reasons, have come to be isolated from other peers. Their new friendship helps them to resist, until the mechanical attraction and fear the judgment of others do not grasp them unprepared.

Ash and friends (this time accompanied by newcomer Dawn) arrive at an idyllic village on their way to their next Pokemon contest, where chaos will soon erupt with the prophecy of two Pokemon Gods (Dialga and Palkia) and the arrival of a mysterious, seemingly deadly Pokemon named Darkrai, which has the power to distort space and time.

After the conclusion of the Battle City Tournament, deep below the sands of Egypt, an ancient evil has awakened. Anubis, who was defeated centuries ago by Yugi’s mysterious alter ego – the ancient Pharaoh – has returned for revenge. Wielding the power of the Eighth Millennium Item, Anubis is determined to destroy Yugi and take over the world.